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determine z range for localization stacks from widefield stacks and queue them#906

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barentine wants to merge 18 commits into
python-microscopy:masterfrom
barentine:fullzacq
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determine z range for localization stacks from widefield stacks and queue them#906
barentine wants to merge 18 commits into
python-microscopy:masterfrom
barentine:fullzacq

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@barentine
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posting here for discussion - one of the three options suggested in #898. "works", but with a Hoechst stain works more for finding the center of focus rather than the bounds (not robust enough for production runs at the moment and I need to tack back to other priorities).

Proposed changes:

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codecov Bot commented Feb 28, 2021

Codecov Report

Merging #906 (c45c908) into master (5165d2d) will decrease coverage by 0.00%.
The diff coverage is 11.11%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #906      +/-   ##
==========================================
- Coverage   11.30%   11.30%   -0.01%     
==========================================
  Files         624      625       +1     
  Lines       71803    71934     +131     
==========================================
+ Hits         8117     8131      +14     
- Misses      63686    63803     +117     
Impacted Files Coverage Δ
PYME/Acquire/SpoolController.py 0.00% <0.00%> (ø)
PYME/recipes/focus.py 0.00% <0.00%> (ø)
PYME/recipes/modules.py 0.00% <0.00%> (ø)
PYME/Acquire/protocol.py 40.12% <23.52%> (-1.54%) ⬇️
PYME/recipes/acquisition.py 67.53% <31.42%> (-30.09%) ⬇️
PYME/localization/FitFactories/InterpFitR.py 78.18% <0.00%> (-2.73%) ⬇️
PYME/localization/FitFactories/Dumbell3DFitR.py 98.66% <0.00%> (+4.00%) ⬆️

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