973 expansion microscope#976
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set default value of "unitforlinedelay"; update set_ROI function
Co-Authored-By: Annie Wang <6161065+annie-xd-wang@users.noreply.github.com>
AdvancedImagingUTSW
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The only thing that concerns me is this:
# Save the image to the spooled image loader.
# self.spooled_images.save_image(
# image=image, channel=channel_idx, slice_index=slice_idx
# )
If we try to go in the non-live mode, we now throw an error because no data is saved to the spooled_images object.
(navigate) S155475@SW567797 ~ % Exception in thread z-stack Data:
Traceback (most recent call last):
File "/opt/miniconda3/envs/navigate/lib/python3.9/threading.py", line 973, in _bootstrap_inner
self.run()
File "/opt/miniconda3/envs/navigate/lib/python3.9/threading.py", line 910, in run
self._target(*self._args, **self._kwargs)
File "/Users/S155475/Desktop/GitHub/navigate/src/navigate/model/model.py", line 904, in run_data_process
self.show_img_pipe.send(frame_ids[-1])
File "/opt/miniconda3/envs/navigate/lib/python3.9/multiprocessing/connection.py", line 211, in send
self._send_bytes(_ForkingPickler.dumps(obj))
File "/opt/miniconda3/envs/navigate/lib/python3.9/multiprocessing/connection.py", line 416, in _send_bytes
self._send(header + buf)
File "/opt/miniconda3/envs/navigate/lib/python3.9/multiprocessing/connection.py", line 373, in _send
n = write(self._handle, buf)
BrokenPipeError: [Errno 32] Broken pipe
AdvancedImagingUTSW
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Thank you, Annie. This was a much bigger effort than anticipated, but it is a great addition to the software.
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