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1. u-segment3D u-segment3D Public

   Forked from DanuserLab/u-segment3D

   Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with outputs of any 2D segmentation method.

   MATLAB

2. u-segment u-segment Public

   Forked from DanuserLab/u-segment

   A Matlab software package to do 2D cell segmentation.

   MATLAB

3. u-probe u-probe Public

   Forked from DanuserLab/u-probe

   Processing of raw ratiometric biosensor images (for example based on FRET) into fully corrected "ratio maps" or "activation maps" — images showing the localized activation of the biosensor.

   MATLAB

4. u-register u-register Public

   Forked from DanuserLab/u-register

   Analyze local cell edge motions (e.g. protrusion and retraction) and to locally sample intracellular fluorescence signals in 2D fluorescence microscopy data.

   MATLAB

5. u-signal3D u-signal3D Public

   Forked from DanuserLab/u-signal3D

   The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cell surface, enabling comparison and machine-learning of signa…

   MATLAB

6. u-track3D u-track3D Public

   Forked from DanuserLab/u-track3D

   Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.

   MATLAB