allow trimming reads that are too short

Release 2.0.1 (#72)

* fix errors when adding SeqLibs

* fix an error when trying to create multiple orphan SeqLibs

* bump version

update README.md

Globals fix (#35)

* replaced globals() with a dictionary

* increment version

* --version only outputs version number

relicensing and code cleanup (#31)

* pinned pandas version was no longer available in conda

* simplified setup.py by removing Canopy edge case

* updated installation instructions

* removed GPL text

* relicense to BSD 3-clause

* update copyright

* update license

* fixed error in pandas indexing

* added module and object level logging

* removed unused imports

* cleaned up some minor pycharm warnings

* cleaned up some minor pycharm warnings

* update for new matplotlib version

* update version number

* black formatting

Update copyright and version number

Changes for v1.2.0 (#9)

Fix standard error calculation for combined replicates.
Update manuscript link in documentation.
Update version string.

Mention the Conda environment file in the README

Linting and version number updates.

Changes for v1.1.0

Merge changes from dev branch into master for v1.1.0 release.