<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<parent>
		<artifactId>biojava</artifactId>
		<groupId>org.biojava</groupId>
		<version>5.0.0-alpha11</version>
	</parent>
	<artifactId>biojava-protein-disorder</artifactId>
	<packaging>jar</packaging>
	<name>biojava-protein-disorder</name>
	<description>This module is for predicting disordered regions in protein sequences</description>
	<licenses>
		<license>
			<name>GNU LGPL v2</name>
			<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
			<distribution>repo</distribution>
		</license>
	</licenses>
	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<configuration>
					<debug>true</debug>
                </configuration>
			</plugin>
			
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-jar-plugin</artifactId>
				<configuration>
					<!-- Excluding demo package is required for avoiding namespace clashes (demo package is in all modules) for signing the jar. See issue #387 -->
				    <excludes>
                        <exclude>demo/**</exclude>
                    </excludes>
				
					<descriptorRefs>
						<descriptorRef>bin</descriptorRef>
					</descriptorRefs>
					<archive>
						<manifest>
							<addClasspath>true</addClasspath>
							<mainClass>org.biojava.nbio.ronn.ORonn</mainClass>
						</manifest>
						<manifestEntries>
							<product>JRONN a Java RONN (www.strubi.ox.ac.uk/RONN)</product>
							<url>${project.url}</url>
							<author>Peter Troshin</author>
						</manifestEntries>
					</archive>
				</configuration>
			</plugin>
			
		</plugins>
	</build>
	<dependencies>
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava-core</artifactId>
			<version>5.0.0-alpha11</version>
		</dependency>
		<!-- logging dependencies (managed by parent pom, don't set versions or 
			scopes here) -->
		<dependency>
			<groupId>org.slf4j</groupId>
			<artifactId>slf4j-api</artifactId>
		</dependency>
		<!-- binding for log4j2, scope=runTime set in parent pom -->
		<dependency>
			<groupId>org.apache.logging.log4j</groupId>
			<artifactId>log4j-slf4j-impl</artifactId>
		</dependency>
		<dependency>
			<groupId>org.apache.logging.log4j</groupId>
			<artifactId>log4j-api</artifactId>
		</dependency>
		<dependency>
			<groupId>org.apache.logging.log4j</groupId>
			<artifactId>log4j-core</artifactId>
		</dependency>
	</dependencies>

	<properties>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
		<project.build.targetEncoding>UTF-8</project.build.targetEncoding>
	</properties>
</project>
