• Fix error-prone code that did not properly vectorize if statements

• update to work with new readr version

• updates to work with new testthat package, new dplyr package, and new CRAN policies

• refactor code to work with new versions of dplyr and ggplot2

• add support for targets for channel 1 and 2, in newer QuantaSoft export formats (v1.7.4) (thanks @acnb)
• some improvements to Shiny UI

• fix all ggplot2 code to work with new version ggplot2 2.2.0
• add reference to f1000 paper in shiny app About section
• suppress messages from readr
• upgrade to DT v0.2

• better error message when trying to read directory that doesn't have any data files (#10)
• changed default droplet volume to 85 nL based on literature (@seaaan) (#12)
• change one unit test from expect_identical to expect_equal to reflect a change in readr (#13)

Small internal changes to reflect dplyr update

Prepare for re-release to CRAN and to F1000Research

2016-03-22

• Added a 'dirty' bit to a plate, to keep track of whether any changes to the settings have been made that require a re-run of the analysis. Both the shiny app and the command line inform the user if they are using a dirty plate object

• A few bug fixes in the shiny app (don't show in Advanced Settings section the settings that are already shown in Basic Settings, don't show Advanced Settings parameters of other plate types)